2019

• Anna-Leigh Brown# , Minghui Li# , Alexander Goncearenco* , Anna R. Panchenko*. Finding driver mutations in cancer: Elucidating the role of background mutational processes. PLoS Comput Biol. PMID: 31034466

2018

• Ning Zhang , Yuting Chen , Feiyang Zhao, Qing Yang, Franco L. Simonetti, Minghui Li*. PremPDI estimates and interprets the effects of missense mutations on protein-DNA interactions. PLoS Comput Biol. PMID: 30533007

• Feiyang Zhao, Lei Zheng, Alexander Goncearenco, Anna R. Panchenko, Minghui Li*. Computational Approaches to Prioritize Cancer Driver Missense Mutations.International Journal of Molecular Sciences. PMID: 30037003

2017 and before

• Alexander Goncearenco, Minghui Li, Franco L. Simonetti, Benjamin A. Shoemaker, Anna R. Panchenko*. Exploring Protein-Protein Interactions as Drug Targets for Anti-cancer Therapy with In Silico Workflows. Methods in Molecular Biology, In book: Proteomics for Drug Discovery. PMID: 28809006

• Alexander Goncearenco*, Stephanie L. Rager, Minghui Li, Qing-Xiang Sang, Igor B. Rogozin, Anna R. Panchenko*. Exploring background mutational processes to decipher cancer genetic heterogeneity.Nucleic Acids Res. (2017 Web Server Issue).PMID: 28472504

• Minghui Li#, Alexander Goncearenco#, Anna R. Panchenko*. Annotating Mutational Effects on Proteins and Protein Interactions: Designing Novel and Revisiting Existing Protocols. Methods in Molecular Biology, In book: Proteomics. PMID: 28188534

• Minghui Li, Franco L. Simonetti, Alexander Goncearenco,and Anna R. Panchenko* MutaBind estimates and interprets the effects of sequence variants on protein-protein interactions. Nucleic Acids Res. (2016 Web Server Issue). PMID: 27150810

• Minghui Li, Stephen C. Kales, Ke Ma, Benjamin A. Shoemaker, Juan Crespo-Barreto, Andrew L. Cangelosi, Stanley Lipkowitz*, Anna R. Panchenko*. Balancing Protein Stability and Activity in Cancer: A New Approach for Identifying Driver Mutations Affecting CBL Ubiquitin Ligase Activation.. Cancer Res. PMID: 26676746

• Marharyta Petukh, Minghui Li, Emil Alexov*. Predicting Binding Free Energy Change Caused by Point Mutations with Knowledge-Modified MM/PBSA Method. PLoS Comput Biol. PMID: 26146996

• Minghui Li, Marharyta Petukh, Emil Alexov, Anna R. Panchenko*. Predicting the Impact of Missense Mutations on Protein-Protein Binding Affinity. J Chem Theory Comput. PMID: 24803870

• Minghui Li, Benjamin A. Shoemaker, Ratna R. Thangudu, Joan D. Ferraris, Maurice B. Burg, Anna R. Panchenko*. Mutations in DNA-binding loop of NFAT5 transcription factor produce unique outcomes on protein-DNA binding and dynamics. J Phys Chem B. PMID: 23734591

• Minghui Li, Wenjun Zheng*. All-atom molecular dynamics simulations of actin-myosin interactions: a comparative study of cardiac α myosin, β myosin, and fast skeletal muscle myosin. Biochemistry. PMID: 24224850

• Minghui Li, Wenjun Zheng*. All-atom structural investigation of kinesin-microtubule complex constrained by high-quality cryo-electron-microscopy maps. Biochemistry. PMID: 22650362

• Minghui Li, Wenjun Zheng*. Probing the structural and energetic basis of kinesin-microtubule binding using computational alanine-scanning mutagenesis. Biochemistry. PMID: 21910419

• Minghui Li, Quan Luo. Xianggui Xue, Zesheng Li*. Molecular dynamics studies of the 3D structure and planar ligand binding of a quadruplex dimer. J Mol Model. PMID:20508957

• Xianggui Xue, Li Zhao, Zhongyuan Lu, Minghui Li, Zesheng Li*. Molecular dynamics simulation study on the isomerization and molecular orientation of liquid crystals formed by azobenzene and (1-cyclohexenyl)phenyldiazene. Phys Chem Chem Phys. PMID: 21625705

• Li Zhao, Xuemei Duan, Xianggui Xue, Minghui Li, Zesheng Li*. Self-assembled monolayers of oligosilane on the silicon (001) surface: molecular dynamics simulations. J Mol Model. PMID: 20535622

• Minghui Li, Quan Luo, Zesheng Li*. Molecular Dynamics Study on the Interactions of Porphyrin with Two Antiparallel Human Telomeric Quadruplexes. J Phys Chem B. PMID: 20405878

• Minghui Li, Yihan Zhou, Quan Luo, Zesheng Li*. The 3D structures of G-quadruplexes of HIV-1 integrase inhibitors: molecular dynamics simulations in aqueous solution and in the gas phase. J Mol Model. PMID: 19802725

• Minghui Li, Quan Luo, Xianggui Xue, Zesheng Li*. Toward a full structural characterization of G-Quadruplex DNA in aqueous solution: molecular dynamics simulations of four G-Quadruplex molecules. J. Mol. Struc: THEOCHEM